Top promoter[SNPs in top promoter]Corrected
coexpression
score
Bonferroni-corrected
p-value
FDR
p3@RPL17 [rs3814888]0.6800.0
+ linkage disequilibrium:rs3814888:rs7506517 D'=1.0; r2=0.57. enhancer@chr18:46946352-46946456 [rs7506517]0.0510.91
p1@CENPW [rs9388486]0.6700.0
p1@TCF19 [rs720468, rs3130456]0.6500.0
p1@RPL35P2 [rs6457769]0.6200.0
p1@PSMC3 [rs7948705]0.600.0
+ linkage disequilibrium:rs7948705:rs3740689 D'=1.0; r2=0.58. p@chr11:47380465..47380487,- [rs3740689]0.0210.98
p@chr1:184021069..184021077,+ [rs2274432]0.5800.0
p2@CPNE1, p2@RBM12 [rs6119636]0.5600.0
p@chr17:47039347..47039351,+ [rs2291725, rs2291726]0.5400.0
p1@NCAPG [rs11941723, rs2074974]0.5400.0
+ linkage disequilibrium:rs2074974:rs4698210 D'=1.0; r2=0.62. enhancer@chr4:17827662-17827866 [rs4698210]0.3110.21
p2@RQCD1 [rs500422]0.5200.0
+ linkage disequilibrium:rs500422:rs611203 D'=1.0; r2=0.98. p2@PLCD4 [rs611203]0.1210.76
p@chr6:31595842..31595910,- [rs1046080]0.5100.0
+ linkage disequilibrium:rs1046080:rs3130054 D'=0.56; r2=0.19. p1@MCCD1 [rs3130054]0.2810.3
p4@HIST1H4A, p4@HIST1H4B, p4@HIST1H4D, p4@HIST1H4E, p4@HIST1H4F, p4@HIST1H4H, p4@HIST1H4I, p4@HIST1H4J, p4@HIST1H4K, p4@HIST1H4L, p4@HIST2H4A, p4@HIST2H4B, p4@HIST4H4, p5@HIST1H4C [rs2393593, rs3999544]0.5100.0
p@chr20:47679880..47679883,+ [rs6019621]0.4900.0
p1@JMJD4 [rs2295994]0.4900.0
p1@ZNFX1-AS1 [rs6648]0.4800.0
p1@EXOSC5 [rs10853751]0.4800.0
+ linkage disequilibrium:same SNP, different promoter: chr19:41903221..41903222,+ [rs10853751]0.0710.85
p@chr2:242192880..242192896,- [rs7578199]0.4700.0
p12@ZBTB38 [rs1863868]0.4700.0
p@chr7:23507613..23507647,+ [rs4496867]0.4600.0
chr16:2257216..2257230,+ [rs26862]0.450.080.0
p@chr9:95691523..95691530,- [rs13296126]0.430.180.01
+ linkage disequilibrium:rs13296126:rs13293147 D'=0.97; r2=0.6. enhancer@chr9:95727493-95728071 [rs13293147]0.0410.93
chr9:86593333..86593367,- [rs167203]0.430.220.01
p@chr7:92244110..92244132,- [rs42039]0.430.30.01
p@chr6:28926723..28926729,+ [rs6901599]0.410.620.03
p@chr4:145568170..145568180,- [rs7689420]0.410.730.03
enhancer@chr7:46431809-46432084 [rs12534091]0.3910.04
+ linkage disequilibrium:rs12534091:rs13231201 D'=1.0; r2=0.85. p@chr7:46385081..46385087,+ [rs13231201, rs13233996]
rs12534091:rs13233996 D'=1.0; r2=0.85. p@chr7:46385081..46385087,+ [rs13231201, rs13233996]
0.2410.41
p1@ENST00000408001 [rs2764205]0.3910.04
+ linkage disequilibrium:rs2764205:rs3800457 D'=1.0; r2=0.96. enhancer@chr6:34663389-34663600 [rs3800457]0.1610.62
p@chr17:59485435..59485452,+ [rs2240736]0.3910.05
chr11:75277935..75277984,+ [rs651581]0.3910.05
enhancer@chr2:241860652-241861096 [rs10207380]0.3710.06
+ linkage disequilibrium:rs10207380:rs7591322 D'=1.0; r2=0.9. enhancer@chr2:241899989-241900661 [rs7591322]0.0610.88
enhancer@chr15:74226590-74227025 [rs2028386, rs4337252]0.3710.07
p1@ENST00000438379 [rs1182175]0.3710.07
p3@SLC38A9 [rs6450345]0.3610.08
+ linkage disequilibrium:rs6450345:rs2408204 D'=1.0; r2=0.91. p4@SLC38A9 [rs2408204]0.2710.31
p2@MFAP2 [rs9435732]0.3510.09
+ linkage disequilibrium:rs9435732:rs732679 D'=0.64; r2=0.26. chr1:17371735..17371757,- [rs732679, rs10887994]
rs9435732:rs10887994 D'=0.95; r2=0.35. chr1:17371735..17371757,- [rs732679, rs10887994]
0.1310.72
p@chr13:92001646..92001654,+ [rs4284505]0.3510.09
p1@ENST00000544890 [rs6633]0.3510.1
+ linkage disequilibrium:rs6633:rs12817892 D'=1.0; r2=1.0. p1@ENST00000545406 [rs12817892]0.0910.83
enhancer@chr13:51103280-51103738 [rs536338]0.3510.1
chr6:81442621..81442640,+ [rs11756729]0.3410.12
p@chr15:84408895..84408904,+ [rs1426160]0.3410.12
chr6:32148013..32148032,+ [rs3134943]0.3310.15
chr6:31237739..31237758,+ [rs9264606, rs9264608]0.3310.18
p@chr5:33229308..33229311,- [rs7443939]0.3210.19
p3@PMPCA [rs3812584]0.3210.19
+ linkage disequilibrium:same SNP, different promoter: p4@PMPCA [rs3812584]0.0810.84
enhancer@chr20:34471781-34472424 [rs3787173]0.3110.21
+ linkage disequilibrium:rs3787173:rs11699815 D'=1.0; r2=1.0. p7@SCAND1 [rs11699815]0.1110.8
p6@ACSS2 [rs3818273]0.3110.21
+ linkage disequilibrium:rs3818273:rs6120778 D'=1.0; r2=0.75. p9@MYH7B [rs6120778]0.011.0
p@chr5:134364600..134364638,- [rs479632]0.3110.21
p@chr5:32829061..32829092,+ [rs7733331]0.3110.23
enhancer@chr19:2182828-2183132 [rs12609327]0.310.24
enhancer@chr10:80918312-80918688 [rs779932, rs779933]0.310.24
p3@ANP32E [rs6679147]0.310.26
p4@EHMT2 [rs7887]0.2910.27
+ linkage disequilibrium:rs7887:rs2072633 D'=0.74; r2=0.19. p37@CFB [rs2072633]0.110.8
p5@NARFL [rs12597563]0.2910.27
p5@ITCH [rs6579167]0.2910.27
p@chr5:131541116..131541121,- [rs10075459]0.2910.27
enhancer@chr6:7692548-7692711 [rs7756651]0.2910.28
p@chr6:7786714..7786717,+ [rs5009024]0.2810.28
p@chr20:33734472..33734476,- [rs1415771]0.2810.3
enhancer@chr3:136492102-136492187 [rs9819856]0.2810.3
p3@TNPO1 [rs34651]0.2810.3
enhancer@chr11:12697923-12698543 [rs7926971]0.2810.3
p@chr10:81113959..81113978,+ [rs7332]0.2710.31
enhancer@chr15:99214674-99215061 [rs2311767]0.2710.32
enhancer@chr3:13555627-13555924 [rs2597513, rs2655226]0.2710.32
p@chr12:123616405..123616412,- [rs1727294]0.2710.32
p10@SCUBE3 [rs2071920]0.2610.33
+ linkage disequilibrium:rs2071920:rs6899744 D'=1.0; r2=0.05. p@chr6:35286250..35286262,+ [rs6899744]0.2410.41
enhancer@chr5:54886412-54886788 [rs1983189]0.2610.35
+ linkage disequilibrium:rs1983189:rs3936310 D'=0.89; r2=0.64. enhancer@chr5:54896440-54896979 [rs3936310]0.1310.72
p5@NOS3 [rs743507]0.2610.35
p@chr17:30326770..30326783,+ [rs537166]0.2510.36
enhancer@chr5:32768263-32768639 [rs3792752]0.2510.36
enhancer@chr1:23448967-23449247 [rs1571466]0.2510.37
+ linkage disequilibrium:rs1571466:rs2806561 D'=1.0; r2=1.0. p3@LUZP1 [rs2806561]0.1310.73
p@chr6:32575596..32575598,- [rs9461776]0.2410.39
enhancer@chr9:95288173-95288480 [rs4744137]0.2410.39
p@chr19:7184803..7184814,- [rs891088]0.2410.41
p@chr6:142702634..142702638,+ [rs7757571]0.2410.41
p@chr1:172134755..172134764,+ [rs537444]0.2310.42
+ linkage disequilibrium:same SNP, different promoter: p@chr1:172134736..172134739,+ [rs537444]0.110.8
p@chr12:56727954..56727978,+ [rs2371494]0.2310.42
enhancer@chr8:135628946-135629314 [rs7010948, rs7011157]0.2310.44
+ linkage disequilibrium:rs7010948:rs894344 D'=0.89; r2=0.59. p@chr8:135612764..135612786,- [rs894344]
rs7011157:rs894344 D'=0.89; r2=0.59. p@chr8:135612764..135612786,- [rs894344]
0.1810.56
p1@C20orf173 [rs6060450]0.2310.44
p13@TGFB2 [rs991967]0.2210.46
p@chr20:33356385..33356390,- [rs2295353]0.2210.47
p@chr13:33232408..33232414,+ [rs2301393, rs7335546]0.2110.48
p@chr12:93967885..93967910,+ [rs3782415]0.2110.49
enhancer@chr5:131406243-131406684 [rs721121]0.2110.49
p@chr19:3434311..3434347,+ [rs2074977]0.2110.49
enhancer@chr1:77980165-77980378 [rs12729914]0.2110.49
enhancer@chr2:25457688-25458068 [rs11695471]0.2110.49
+ linkage disequilibrium:rs11695471:rs7594432 D'=1.0; r2=0.35. enhancer@chr2:25482494-25482888 [rs7594432]0.1710.6
p13@ESR1 [rs2077647]0.210.5
enhancer@chr7:2749963-2750288 [rs7798875]0.210.5
enhancer@chr6:131327805-131328036 [rs6921207]0.210.5
p@chr3:171965372..171965436,+ [rs1039027]0.210.52
enhancer@chr12:94178297-94178734 [rs10859579]0.1910.53
p@chr12:11898277..11898290,+ [rs1009954]0.1910.54
p10@FAM134A [rs3210652]0.1910.54
enhancer@chr14:68699331-68699744 [rs1314913]0.1910.56
p@chr18:46582506..46582523,+ [rs16950294, rs16950298, rs16950303]0.1810.59
enhancer@chr20:6594261-6594618 [rs6038557, rs6054392]0.1810.59
enhancer@chr2:88899554-88899981 [rs1913671]0.1710.59
p@chr6:26500524..26500540,+ [rs13194984]0.1710.6
enhancer@chr17:61639369-61639739 [rs9906747]0.1710.61
p2@SLFNL1 [rs17357954]0.1710.61
p@chr6:35765153..35765158,+ [rs2766597]0.1710.61
p@chr6:32412808..32412821,- [rs3135388]0.1610.61
p@chr15:84295121..84295125,+ [rs2585070]0.1610.62
enhancer@chr13:51210187-51210463 [rs7991818]0.1610.62
p4@SLC3A1 [rs3738985]0.1610.63
enhancer@chr2:233181304-233181393 [rs6743962]0.1610.63
enhancer@chr20:47471567-47471956 [rs6012541, rs6095329]0.1510.65
+ linkage disequilibrium:rs6012541:rs752421 D'=0.98; r2=0.95. enhancer@chr20:47434951-47435381 [rs752421]
rs6095329:rs752421 D'=0.98; r2=0.95. enhancer@chr20:47434951-47435381 [rs752421]
0.0710.85
enhancer@chr11:65248969-65249218 [rs1787666]0.1510.66
p@chr7:20392799..20392811,+ [rs2214442]0.1310.72
p@chr9:98245687..98245692,- [rs17369383]0.1310.73
enhancer@chr15:70047760-70048370 [rs10152590, rs10152591]0.1210.76
enhancer@chr2:25136821-25136958 [rs10203386]0.1210.77
+ linkage disequilibrium:rs10203386:rs9631062 D'=0.96; r2=0.52. p@chr2:25110228..25110248,+ [rs9631062]0.0910.81
p@chr1:184128142..184128173,+ [rs6424925]0.1110.77
chr5:168233584..168233600,- [rs17553840]0.110.8
+ linkage disequilibrium:rs17553840:rs17635284 D'=1.0; r2=1.0. p@chr5:168246378..168246386,+ [rs17635284]0.0210.98
p9@ITIH4 [rs13072536]0.110.8
p1@C2CD4A [rs8039105]0.110.8
p@chr6:76415669..76415672,+ [rs9343320]0.110.8
p4@MICAL1 [rs2277113]0.110.81
+ linkage disequilibrium:rs2277113:rs9398202 D'=1.0; r2=0.88. enhancer@chr6:109780095-109780443 [rs9398202]0.0710.85
enhancer@chr3:135861520-135861675 [rs9881400]0.0910.84
p@chr1:149875845..149875874,- [rs7534365]0.0810.84
enhancer@chr11:48102794-48103200 [rs6485807]0.0810.84
p8@PRKG2 [rs788861]0.0810.84
p@chr5:131675781..131675785,+ [rs272872]0.0810.84
p@chr6:6884633..6884678,- [rs4960263]0.0810.84
enhancer@chr20:34689096-34689267 [rs2746102]0.0710.86
p@chr3:11643506..11643527,- [rs2276749]0.0610.87
p@chr2:219610047..219610074,- [rs2272189]0.0610.88
p@chr5:179737830..179737831,- [rs888926]0.0510.91
enhancer@chr6:34358644-34359014 [rs3798564]0.0510.91
p2@ENST00000473753 [rs11049416]0.0510.91
enhancer@chr7:28122864-28123088 [rs10951191]0.0410.93
p6@CCDC91 [rs10843172]0.0410.93
p@chr9:139118938..139118947,- [rs10858250]0.0410.93
p3@HCG22 [rs4713429, rs9262615]0.0410.93
+ linkage disequilibrium:rs4713429:rs7744253 D'=0.94; r2=0.86. p@chr6:31023284..31023287,- [rs7744253]
rs9262615:rs7744253 D'=0.92; r2=0.84. p@chr6:31023284..31023287,- [rs7744253]
0.0310.96
chr17:21279520..21279522,+ [rs7213608]0.0210.97
p2@SOCS5 [rs3829835]0.0110.99
p@chr20:34820071..34820089,+ [rs3813918]0.0110.99
p@chr15:100749314..100749319,- [rs5026360]0.011.0